Left reads: Input : 1399054 Mapped : 1160753 (83.0% of input) of these: 39327 ( 3.4%) have multiple alignments (4391 have >20) Right reads: Input : 1399054 Mapped : 1186249 (84.8% of input) of these: 40172 ( 3.4%) have multiple alignments (4391 have >20) 83.9% overall read mapping rate. Aligned pairs: 1058542 of these: 36376 ( 3.4%) have multiple alignments 21525 ( 2.0%) are discordant alignments 74.1% concordant pair alignment rate.