Left reads: Input : 1131587 Mapped : 1023470 (90.4% of input) of these: 100275 ( 9.8%) have multiple alignments (10606 have >20) Right reads: Input : 1131587 Mapped : 973145 (86.0% of input) of these: 97237 (10.0%) have multiple alignments (10606 have >20) 88.2% overall read mapping rate. Aligned pairs: 901331 of these: 90987 (10.1%) have multiple alignments 17263 ( 1.9%) are discordant alignments 78.1% concordant pair alignment rate.