Left reads: Input : 500065 Mapped : 439700 (87.9% of input) of these: 110077 (25.0%) have multiple alignments (14188 have >20) Right reads: Input : 500065 Mapped : 433451 (86.7% of input) of these: 109196 (25.2%) have multiple alignments (14187 have >20) 87.3% overall read mapping rate. Aligned pairs: 389709 of these: 99347 (25.5%) have multiple alignments 7484 ( 1.9%) are discordant alignments 76.4% concordant pair alignment rate.