Left reads: Input : 395289 Mapped : 332495 (84.1% of input) of these: 11147 ( 3.4%) have multiple alignments (729 have >20) Right reads: Input : 395289 Mapped : 320413 (81.1% of input) of these: 10844 ( 3.4%) have multiple alignments (729 have >20) 82.6% overall read mapping rate. Aligned pairs: 281821 of these: 9452 ( 3.4%) have multiple alignments 6350 ( 2.3%) are discordant alignments 69.7% concordant pair alignment rate.