Left reads: Input : 615085 Mapped : 539489 (87.7% of input) of these: 155930 (28.9%) have multiple alignments (39691 have >20) Right reads: Input : 615085 Mapped : 526225 (85.6% of input) of these: 152844 (29.0%) have multiple alignments (39690 have >20) 86.6% overall read mapping rate. Aligned pairs: 469495 of these: 136665 (29.1%) have multiple alignments 13194 ( 2.8%) are discordant alignments 74.2% concordant pair alignment rate.