Left reads: Input : 918322 Mapped : 822668 (89.6% of input) of these: 163599 (19.9%) have multiple alignments (34557 have >20) Right reads: Input : 918322 Mapped : 785070 (85.5% of input) of these: 158355 (20.2%) have multiple alignments (34557 have >20) 87.5% overall read mapping rate. Aligned pairs: 719613 of these: 145409 (20.2%) have multiple alignments 19975 ( 2.8%) are discordant alignments 76.2% concordant pair alignment rate.