Left reads: Input : 1192719 Mapped : 974229 (81.7% of input) of these: 89597 ( 9.2%) have multiple alignments (8551 have >20) Right reads: Input : 1192719 Mapped : 992213 (83.2% of input) of these: 91468 ( 9.2%) have multiple alignments (8551 have >20) 82.4% overall read mapping rate. Aligned pairs: 873294 of these: 81665 ( 9.4%) have multiple alignments 20191 ( 2.3%) are discordant alignments 71.5% concordant pair alignment rate.