Left reads: Input : 297331 Mapped : 242027 (81.4% of input) of these: 11409 ( 4.7%) have multiple alignments (310 have >20) Right reads: Input : 297331 Mapped : 239360 (80.5% of input) of these: 11312 ( 4.7%) have multiple alignments (310 have >20) 81.0% overall read mapping rate. Aligned pairs: 207319 of these: 9902 ( 4.8%) have multiple alignments 6777 ( 3.3%) are discordant alignments 67.4% concordant pair alignment rate.