Left reads: Input : 355436 Mapped : 292751 (82.4% of input) of these: 11371 ( 3.9%) have multiple alignments (340 have >20) Right reads: Input : 355436 Mapped : 278058 (78.2% of input) of these: 10871 ( 3.9%) have multiple alignments (340 have >20) 80.3% overall read mapping rate. Aligned pairs: 240592 of these: 9354 ( 3.9%) have multiple alignments 4947 ( 2.1%) are discordant alignments 66.3% concordant pair alignment rate.