Left reads: Input : 577890 Mapped : 515157 (89.1% of input) of these: 166716 (32.4%) have multiple alignments (36836 have >20) Right reads: Input : 577890 Mapped : 504080 (87.2% of input) of these: 163908 (32.5%) have multiple alignments (36766 have >20) 88.2% overall read mapping rate. Aligned pairs: 458265 of these: 149809 (32.7%) have multiple alignments 10192 ( 2.2%) are discordant alignments 77.5% concordant pair alignment rate.