Left reads: Input : 407457 Mapped : 343370 (84.3% of input) of these: 16922 ( 4.9%) have multiple alignments (1298 have >20) Right reads: Input : 407457 Mapped : 322250 (79.1% of input) of these: 16183 ( 5.0%) have multiple alignments (1298 have >20) 81.7% overall read mapping rate. Aligned pairs: 283288 of these: 14320 ( 5.1%) have multiple alignments 5724 ( 2.0%) are discordant alignments 68.1% concordant pair alignment rate.