Left reads: Input : 541391 Mapped : 458389 (84.7% of input) of these: 16978 ( 3.7%) have multiple alignments (1117 have >20) Right reads: Input : 541391 Mapped : 442718 (81.8% of input) of these: 16533 ( 3.7%) have multiple alignments (1117 have >20) 83.2% overall read mapping rate. Aligned pairs: 391410 of these: 14545 ( 3.7%) have multiple alignments 6430 ( 1.6%) are discordant alignments 71.1% concordant pair alignment rate.