Left reads: Input : 312724 Mapped : 257972 (82.5% of input) of these: 10495 ( 4.1%) have multiple alignments (271 have >20) Right reads: Input : 312724 Mapped : 245418 (78.5% of input) of these: 9923 ( 4.0%) have multiple alignments (271 have >20) 80.5% overall read mapping rate. Aligned pairs: 218137 of these: 8829 ( 4.0%) have multiple alignments 6196 ( 2.8%) are discordant alignments 67.8% concordant pair alignment rate.