Left reads: Input : 719060 Mapped : 605591 (84.2% of input) of these: 12626 ( 2.1%) have multiple alignments (1218 have >20) Right reads: Input : 719060 Mapped : 604396 (84.1% of input) of these: 12661 ( 2.1%) have multiple alignments (1218 have >20) 84.1% overall read mapping rate. Aligned pairs: 542874 of these: 11599 ( 2.1%) have multiple alignments 6010 ( 1.1%) are discordant alignments 74.7% concordant pair alignment rate.