Left reads: Input : 1560577 Mapped : 1399963 (89.7% of input) of these: 133972 ( 9.6%) have multiple alignments (15363 have >20) Right reads: Input : 1560577 Mapped : 1345048 (86.2% of input) of these: 130965 ( 9.7%) have multiple alignments (15363 have >20) 87.9% overall read mapping rate. Aligned pairs: 1240200 of these: 121354 ( 9.8%) have multiple alignments 24533 ( 2.0%) are discordant alignments 77.9% concordant pair alignment rate.