Left reads: Input : 1608044 Mapped : 1389364 (86.4% of input) of these: 57687 ( 4.2%) have multiple alignments (5700 have >20) Right reads: Input : 1608044 Mapped : 1369128 (85.1% of input) of these: 56840 ( 4.2%) have multiple alignments (5700 have >20) 85.8% overall read mapping rate. Aligned pairs: 1273471 of these: 52698 ( 4.1%) have multiple alignments 14783 ( 1.2%) are discordant alignments 78.3% concordant pair alignment rate.