Left reads: Input : 1122841 Mapped : 916076 (81.6% of input) of these: 62957 ( 6.9%) have multiple alignments (6810 have >20) Right reads: Input : 1122841 Mapped : 916827 (81.7% of input) of these: 63502 ( 6.9%) have multiple alignments (6810 have >20) 81.6% overall read mapping rate. Aligned pairs: 827247 of these: 57363 ( 6.9%) have multiple alignments 16194 ( 2.0%) are discordant alignments 72.2% concordant pair alignment rate.