Left reads: Input : 485012 Mapped : 429643 (88.6% of input) of these: 11758 ( 2.7%) have multiple alignments (905 have >20) Right reads: Input : 485012 Mapped : 410105 (84.6% of input) of these: 11365 ( 2.8%) have multiple alignments (905 have >20) 86.6% overall read mapping rate. Aligned pairs: 374128 of these: 10258 ( 2.7%) have multiple alignments 6052 ( 1.6%) are discordant alignments 75.9% concordant pair alignment rate.