Left reads: Input : 716175 Mapped : 608341 (84.9% of input) of these: 11983 ( 2.0%) have multiple alignments (882 have >20) Right reads: Input : 716175 Mapped : 601974 (84.1% of input) of these: 11939 ( 2.0%) have multiple alignments (882 have >20) 84.5% overall read mapping rate. Aligned pairs: 543485 of these: 11008 ( 2.0%) have multiple alignments 6522 ( 1.2%) are discordant alignments 75.0% concordant pair alignment rate.