Left reads: Input : 1382517 Mapped : 1202478 (87.0% of input) of these: 166022 (13.8%) have multiple alignments (22788 have >20) Right reads: Input : 1382517 Mapped : 1157414 (83.7% of input) of these: 162513 (14.0%) have multiple alignments (22787 have >20) 85.3% overall read mapping rate. Aligned pairs: 1059640 of these: 149293 (14.1%) have multiple alignments 20412 ( 1.9%) are discordant alignments 75.2% concordant pair alignment rate.