Left reads: Input : 709825 Mapped : 629139 (88.6% of input) of these: 59995 ( 9.5%) have multiple alignments (6227 have >20) Right reads: Input : 709825 Mapped : 611514 (86.1% of input) of these: 59207 ( 9.7%) have multiple alignments (6227 have >20) 87.4% overall read mapping rate. Aligned pairs: 557600 of these: 54759 ( 9.8%) have multiple alignments 12582 ( 2.3%) are discordant alignments 76.8% concordant pair alignment rate.