Left reads: Input : 1348253 Mapped : 1153917 (85.6% of input) of these: 161620 (14.0%) have multiple alignments (22964 have >20) Right reads: Input : 1348253 Mapped : 1156166 (85.8% of input) of these: 163283 (14.1%) have multiple alignments (22964 have >20) 85.7% overall read mapping rate. Aligned pairs: 1042123 of these: 148024 (14.2%) have multiple alignments 19010 ( 1.8%) are discordant alignments 75.9% concordant pair alignment rate.