Left reads: Input : 1395884 Mapped : 1263599 (90.5% of input) of these: 122025 ( 9.7%) have multiple alignments (17861 have >20) Right reads: Input : 1395884 Mapped : 1188293 (85.1% of input) of these: 117646 ( 9.9%) have multiple alignments (17861 have >20) 87.8% overall read mapping rate. Aligned pairs: 1104945 of these: 109565 ( 9.9%) have multiple alignments 22674 ( 2.1%) are discordant alignments 77.5% concordant pair alignment rate.