Left reads: Input : 789939 Mapped : 695164 (88.0% of input) of these: 192717 (27.7%) have multiple alignments (36304 have >20) Right reads: Input : 789939 Mapped : 681291 (86.2% of input) of these: 189920 (27.9%) have multiple alignments (36274 have >20) 87.1% overall read mapping rate. Aligned pairs: 618221 of these: 173991 (28.1%) have multiple alignments 9961 ( 1.6%) are discordant alignments 77.0% concordant pair alignment rate.