Left reads: Input : 1796621 Mapped : 1627865 (90.6% of input) of these: 151614 ( 9.3%) have multiple alignments (22516 have >20) Right reads: Input : 1796621 Mapped : 1543644 (85.9% of input) of these: 147037 ( 9.5%) have multiple alignments (22516 have >20) 88.3% overall read mapping rate. Aligned pairs: 1434197 of these: 136290 ( 9.5%) have multiple alignments 27182 ( 1.9%) are discordant alignments 78.3% concordant pair alignment rate.