Left reads: Input : 260802 Mapped : 215754 (82.7% of input) of these: 6747 ( 3.1%) have multiple alignments (354 have >20) Right reads: Input : 260802 Mapped : 216419 (83.0% of input) of these: 6654 ( 3.1%) have multiple alignments (354 have >20) 82.9% overall read mapping rate. Aligned pairs: 187984 of these: 5810 ( 3.1%) have multiple alignments 3557 ( 1.9%) are discordant alignments 70.7% concordant pair alignment rate.