Left reads: Input : 891163 Mapped : 801994 (90.0% of input) of these: 102791 (12.8%) have multiple alignments (16928 have >20) Right reads: Input : 891163 Mapped : 772228 (86.7% of input) of these: 100486 (13.0%) have multiple alignments (16928 have >20) 88.3% overall read mapping rate. Aligned pairs: 712367 of these: 93349 (13.1%) have multiple alignments 14771 ( 2.1%) are discordant alignments 78.3% concordant pair alignment rate.