Left reads: Input : 1241683 Mapped : 1086541 (87.5% of input) of these: 62035 ( 5.7%) have multiple alignments (7456 have >20) Right reads: Input : 1241683 Mapped : 1053451 (84.8% of input) of these: 60851 ( 5.8%) have multiple alignments (7456 have >20) 86.2% overall read mapping rate. Aligned pairs: 958933 of these: 56076 ( 5.8%) have multiple alignments 16524 ( 1.7%) are discordant alignments 75.9% concordant pair alignment rate.