Left reads: Input : 956664 Mapped : 811213 (84.8% of input) of these: 33258 ( 4.1%) have multiple alignments (4656 have >20) Right reads: Input : 956664 Mapped : 788644 (82.4% of input) of these: 32626 ( 4.1%) have multiple alignments (4656 have >20) 83.6% overall read mapping rate. Aligned pairs: 723137 of these: 29966 ( 4.1%) have multiple alignments 12354 ( 1.7%) are discordant alignments 74.3% concordant pair alignment rate.