Left reads: Input : 281762 Mapped : 239630 (85.0% of input) of these: 18855 ( 7.9%) have multiple alignments (696 have >20) Right reads: Input : 281762 Mapped : 224900 (79.8% of input) of these: 17937 ( 8.0%) have multiple alignments (696 have >20) 82.4% overall read mapping rate. Aligned pairs: 200512 of these: 16089 ( 8.0%) have multiple alignments 5131 ( 2.6%) are discordant alignments 69.3% concordant pair alignment rate.