Left reads: Input : 1270854 Mapped : 1120645 (88.2% of input) of these: 91053 ( 8.1%) have multiple alignments (6663 have >20) Right reads: Input : 1270854 Mapped : 1125350 (88.6% of input) of these: 91800 ( 8.2%) have multiple alignments (6663 have >20) 88.4% overall read mapping rate. Aligned pairs: 1021447 of these: 84632 ( 8.3%) have multiple alignments 17156 ( 1.7%) are discordant alignments 79.0% concordant pair alignment rate.