Left reads: Input : 776200 Mapped : 701917 (90.4% of input) of these: 88553 (12.6%) have multiple alignments (8979 have >20) Right reads: Input : 776200 Mapped : 673598 (86.8% of input) of these: 86063 (12.8%) have multiple alignments (8979 have >20) 88.6% overall read mapping rate. Aligned pairs: 621720 of these: 79831 (12.8%) have multiple alignments 12525 ( 2.0%) are discordant alignments 78.5% concordant pair alignment rate.