Left reads: Input : 611681 Mapped : 405007 (66.2% of input) of these: 23624 ( 5.8%) have multiple alignments (2264 have >20) Right reads: Input : 611681 Mapped : 399952 (65.4% of input) of these: 23433 ( 5.9%) have multiple alignments (2264 have >20) 65.8% overall read mapping rate. Aligned pairs: 333633 of these: 19259 ( 5.8%) have multiple alignments 3036 ( 0.9%) are discordant alignments 54.0% concordant pair alignment rate.