Left reads: Input : 221869 Mapped : 184071 (83.0% of input) of these: 7171 ( 3.9%) have multiple alignments (481 have >20) Right reads: Input : 221869 Mapped : 176099 (79.4% of input) of these: 6833 ( 3.9%) have multiple alignments (481 have >20) 81.2% overall read mapping rate. Aligned pairs: 153790 of these: 5980 ( 3.9%) have multiple alignments 3483 ( 2.3%) are discordant alignments 67.7% concordant pair alignment rate.