Left reads: Input : 1574311 Mapped : 1422330 (90.3% of input) of these: 114954 ( 8.1%) have multiple alignments (8417 have >20) Right reads: Input : 1574311 Mapped : 1359482 (86.4% of input) of these: 112069 ( 8.2%) have multiple alignments (8417 have >20) 88.4% overall read mapping rate. Aligned pairs: 1260514 of these: 105392 ( 8.4%) have multiple alignments 22390 ( 1.8%) are discordant alignments 78.6% concordant pair alignment rate.