Left reads: Input : 1041348 Mapped : 952257 (91.4% of input) of these: 88236 ( 9.3%) have multiple alignments (10391 have >20) Right reads: Input : 1041348 Mapped : 896346 (86.1% of input) of these: 85175 ( 9.5%) have multiple alignments (10391 have >20) 88.8% overall read mapping rate. Aligned pairs: 836807 of these: 79574 ( 9.5%) have multiple alignments 15561 ( 1.9%) are discordant alignments 78.9% concordant pair alignment rate.