Left reads: Input : 404877 Mapped : 341164 (84.3% of input) of these: 12947 ( 3.8%) have multiple alignments (1630 have >20) Right reads: Input : 404877 Mapped : 328364 (81.1% of input) of these: 12437 ( 3.8%) have multiple alignments (1630 have >20) 82.7% overall read mapping rate. Aligned pairs: 290625 of these: 11027 ( 3.8%) have multiple alignments 6065 ( 2.1%) are discordant alignments 70.3% concordant pair alignment rate.