Left reads: Input : 1537926 Mapped : 1393421 (90.6% of input) of these: 125430 ( 9.0%) have multiple alignments (10357 have >20) Right reads: Input : 1537926 Mapped : 1328792 (86.4% of input) of these: 121952 ( 9.2%) have multiple alignments (10356 have >20) 88.5% overall read mapping rate. Aligned pairs: 1233108 of these: 114456 ( 9.3%) have multiple alignments 24203 ( 2.0%) are discordant alignments 78.6% concordant pair alignment rate.