Left reads: Input : 1092644 Mapped : 979168 (89.6% of input) of these: 107171 (10.9%) have multiple alignments (19405 have >20) Right reads: Input : 1092644 Mapped : 929990 (85.1% of input) of these: 104107 (11.2%) have multiple alignments (19405 have >20) 87.4% overall read mapping rate. Aligned pairs: 855685 of these: 95646 (11.2%) have multiple alignments 18799 ( 2.2%) are discordant alignments 76.6% concordant pair alignment rate.