Left reads: Input : 493528 Mapped : 425082 (86.1% of input) of these: 45034 (10.6%) have multiple alignments (2068 have >20) Right reads: Input : 493528 Mapped : 406232 (82.3% of input) of these: 43758 (10.8%) have multiple alignments (2068 have >20) 84.2% overall read mapping rate. Aligned pairs: 363816 of these: 39507 (10.9%) have multiple alignments 8696 ( 2.4%) are discordant alignments 72.0% concordant pair alignment rate.