Left reads: Input : 232247 Mapped : 195851 (84.3% of input) of these: 6496 ( 3.3%) have multiple alignments (531 have >20) Right reads: Input : 232247 Mapped : 188430 (81.1% of input) of these: 6282 ( 3.3%) have multiple alignments (531 have >20) 82.7% overall read mapping rate. Aligned pairs: 166835 of these: 5539 ( 3.3%) have multiple alignments 3557 ( 2.1%) are discordant alignments 70.3% concordant pair alignment rate.