Left reads: Input : 591457 Mapped : 530025 (89.6% of input) of these: 40517 ( 7.6%) have multiple alignments (1783 have >20) Right reads: Input : 591457 Mapped : 508718 (86.0% of input) of these: 39364 ( 7.7%) have multiple alignments (1783 have >20) 87.8% overall read mapping rate. Aligned pairs: 467161 of these: 35782 ( 7.7%) have multiple alignments 10132 ( 2.2%) are discordant alignments 77.3% concordant pair alignment rate.