Left reads: Input : 948872 Mapped : 812180 (85.6% of input) of these: 21287 ( 2.6%) have multiple alignments (1688 have >20) Right reads: Input : 948872 Mapped : 782057 (82.4% of input) of these: 20625 ( 2.6%) have multiple alignments (1688 have >20) 84.0% overall read mapping rate. Aligned pairs: 705092 of these: 18923 ( 2.7%) have multiple alignments 11284 ( 1.6%) are discordant alignments 73.1% concordant pair alignment rate.