Left reads: Input : 1194879 Mapped : 988081 (82.7% of input) of these: 46328 ( 4.7%) have multiple alignments (4062 have >20) Right reads: Input : 1194879 Mapped : 968309 (81.0% of input) of these: 45735 ( 4.7%) have multiple alignments (4060 have >20) 81.9% overall read mapping rate. Aligned pairs: 882402 of these: 42180 ( 4.8%) have multiple alignments 18114 ( 2.1%) are discordant alignments 72.3% concordant pair alignment rate.