Left reads: Input : 1408223 Mapped : 1263294 (89.7% of input) of these: 132160 (10.5%) have multiple alignments (18016 have >20) Right reads: Input : 1408223 Mapped : 1211297 (86.0% of input) of these: 129288 (10.7%) have multiple alignments (18016 have >20) 87.9% overall read mapping rate. Aligned pairs: 1116030 of these: 120093 (10.8%) have multiple alignments 22953 ( 2.1%) are discordant alignments 77.6% concordant pair alignment rate.