Left reads: Input : 1485329 Mapped : 1321039 (88.9% of input) of these: 138816 (10.5%) have multiple alignments (24403 have >20) Right reads: Input : 1485329 Mapped : 1285191 (86.5% of input) of these: 137368 (10.7%) have multiple alignments (24404 have >20) 87.7% overall read mapping rate. Aligned pairs: 1177824 of these: 125383 (10.6%) have multiple alignments 23920 ( 2.0%) are discordant alignments 77.7% concordant pair alignment rate.