Left reads: Input : 1532048 Mapped : 1387272 (90.6% of input) of these: 159603 (11.5%) have multiple alignments (22897 have >20) Right reads: Input : 1532048 Mapped : 1333342 (87.0% of input) of these: 156511 (11.7%) have multiple alignments (22891 have >20) 88.8% overall read mapping rate. Aligned pairs: 1235766 of these: 146288 (11.8%) have multiple alignments 26773 ( 2.2%) are discordant alignments 78.9% concordant pair alignment rate.