Left reads: Input : 403132 Mapped : 359741 (89.2% of input) of these: 12676 ( 3.5%) have multiple alignments (1632 have >20) Right reads: Input : 403132 Mapped : 340869 (84.6% of input) of these: 11987 ( 3.5%) have multiple alignments (1632 have >20) 86.9% overall read mapping rate. Aligned pairs: 313138 of these: 10945 ( 3.5%) have multiple alignments 6395 ( 2.0%) are discordant alignments 76.1% concordant pair alignment rate.