Left reads: Input : 1240463 Mapped : 1116465 (90.0% of input) of these: 92618 ( 8.3%) have multiple alignments (13145 have >20) Right reads: Input : 1240463 Mapped : 1066554 (86.0% of input) of these: 90327 ( 8.5%) have multiple alignments (13180 have >20) 88.0% overall read mapping rate. Aligned pairs: 986025 of these: 83929 ( 8.5%) have multiple alignments 17628 ( 1.8%) are discordant alignments 78.1% concordant pair alignment rate.