Left reads: Input : 518593 Mapped : 432779 (83.5% of input) of these: 19184 ( 4.4%) have multiple alignments (620 have >20) Right reads: Input : 518593 Mapped : 419283 (80.9% of input) of these: 18809 ( 4.5%) have multiple alignments (620 have >20) 82.2% overall read mapping rate. Aligned pairs: 366430 of these: 16647 ( 4.5%) have multiple alignments 8884 ( 2.4%) are discordant alignments 68.9% concordant pair alignment rate.